J3_9NLJ_027

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLJ_027 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.0759

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9NLJ|1|R3|U|943
9NLJ|1|R3|G|944
9NLJ|1|R3|G|945
9NLJ|1|R3|A|946
*
9NLJ|1|R3|U|1235
9NLJ|1|R3|A|1236
9NLJ|1|R3|C|1237
*
9NLJ|1|R3|G|1337
9NLJ|1|R3|G|1338
9NLJ|1|R3|A|1339
9NLJ|1|R3|A|1340

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain T

Transfer RNA; tRNA

Chain si

Small ribosomal subunit protein uS9

Chain sm

30S ribosomal protein S13