J3_9NLQ_013

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9NLQ|1|R1|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLQ_013 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0787

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9NLQ|1|R1|C|2091
9NLQ|1|R1|U|2092
9NLQ|1|R1|G|2093
*
9NLQ|1|R1|C|2196
9NLQ|1|R1|U|2197
9NLQ|1|R1|A|2198
9NLQ|1|R1|A|2199
9NLQ|1|R1|C|2200
*
9NLQ|1|R1|G|2223
9NLQ|1|R1|G|2224
9NLQ|1|R1|A|2225
9NLQ|1|R1|C|2226
9NLQ|1|R1|A|2227
9NLQ|1|R1|G|2228

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 28

50S ribosomal protein L28

Chain 9

Large ribosomal subunit protein bL9