J3_9NLQ_026

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLQ_026 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.0845

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

9NLQ|1|R3|C|936
9NLQ|1|R3|A|937
9NLQ|1|R3|A|938
9NLQ|1|R3|G|939
*
9NLQ|1|R3|C|1344
9NLQ|1|R3|U|1345
9NLQ|1|R3|A|1346
9NLQ|1|R3|G|1347
9NLQ|1|R3|U|1348
9NLQ|1|R3|A|1349
9NLQ|1|R3|A|1350
*
9NLQ|1|R3|U|1372
9NLQ|1|R3|G|1373
9NLQ|1|R3|A|1374
9NLQ|1|R3|A|1375
9NLQ|1|R3|U|1376
9NLQ|1|R3|A|1377
9NLQ|1|R3|C|1378
9NLQ|1|R3|G|1379

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sg

30S ribosomal protein S7

Chain si

Small ribosomal subunit protein uS9