J3_9NLQ_029

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

9NLQ|1|R3|U|1212, 9NLQ|1|R3|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLQ_029 not in the Motif Atlas

Geometric match to J3_4LFB_005

Geometric discrepancy: 0.1304

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9NLQ|1|R3|C|990
9NLQ|1|R3|U|991
9NLQ|1|R3|U|992
9NLQ|1|R3|G|993
*
9NLQ|1|R3|C|1045
9NLQ|1|R3|A|1046
9NLQ|1|R3|G|1047
*
9NLQ|1|R3|C|1210
9NLQ|1|R3|U|1211
9NLQ|1|R3|U|1212
9NLQ|1|R3|A|1213
9NLQ|1|R3|C|1214
9NLQ|1|R3|G|1215

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sn

Small ribosomal subunit protein uS14