J3_9NLQ_033

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLQ_033 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1037

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9NLQ|1|R3|U|1073
9NLQ|1|R3|G|1074
*
9NLQ|1|R3|U|1083
9NLQ|1|R3|G|1084
9NLQ|1|R3|U|1085
9NLQ|1|R3|U|1086
*
9NLQ|1|R3|G|1099
9NLQ|1|R3|C|1100
9NLQ|1|R3|A|1101
9NLQ|1|R3|A|1102

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sb

Small ribosomal subunit protein uS2

Chain se

Small ribosomal subunit protein uS5

Chain su

Small ribosomal subunit protein bS21