J3_9NLS_001

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLS_001 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0805

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

9NLS|1|R1|G|30
9NLS|1|R1|C|31
*
9NLS|1|R1|G|474
9NLS|1|R1|C|475
9NLS|1|R1|G|476
9NLS|1|R1|A|477
9NLS|1|R1|A|478
9NLS|1|R1|A|479
9NLS|1|R1|A|480
9NLS|1|R1|G|481
*
9NLS|1|R1|C|509
9NLS|1|R1|C|510

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 20

Large ribosomal subunit protein bL20

Chain 24

Large ribosomal subunit protein uL24