J3_9NLS_013

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9NLS|1|R1|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLS_013 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0945

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9NLS|1|R1|C|2091
9NLS|1|R1|U|2092
9NLS|1|R1|G|2093
*
9NLS|1|R1|C|2196
9NLS|1|R1|U|2197
9NLS|1|R1|A|2198
9NLS|1|R1|A|2199
9NLS|1|R1|C|2200
*
9NLS|1|R1|G|2223
9NLS|1|R1|G|2224
9NLS|1|R1|A|2225
9NLS|1|R1|C|2226
9NLS|1|R1|A|2227
9NLS|1|R1|G|2228

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 28

50S ribosomal protein L28

Chain 9

Large ribosomal subunit protein bL9