J3_9NLS_025

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NLS_025 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0903

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

9NLS|1|R3|C|936
9NLS|1|R3|A|937
9NLS|1|R3|A|938
9NLS|1|R3|G|939
*
9NLS|1|R3|C|1344
9NLS|1|R3|U|1345
9NLS|1|R3|A|1346
9NLS|1|R3|G|1347
9NLS|1|R3|U|1348
9NLS|1|R3|A|1349
9NLS|1|R3|A|1350
*
9NLS|1|R3|U|1372
9NLS|1|R3|G|1373
9NLS|1|R3|A|1374
9NLS|1|R3|A|1375
9NLS|1|R3|U|1376
9NLS|1|R3|A|1377
9NLS|1|R3|C|1378
9NLS|1|R3|G|1379

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sg

30S ribosomal protein S7

Chain si

Small ribosomal subunit protein uS9