J3_9NLS_030
3D structure
- PDB id
- 9NLS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9NLS_030 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1069
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9NLS|1|R3|C|1063
9NLS|1|R3|G|1064
9NLS|1|R3|U|1065
9NLS|1|R3|C|1066
9NLS|1|R3|A|1067
9NLS|1|R3|G|1068
*
9NLS|1|R3|C|1107
9NLS|1|R3|G|1108
9NLS|1|R3|C|1109
9NLS|1|R3|A|1110
9NLS|1|R3|A|1111
9NLS|1|R3|C|1112
9NLS|1|R3|C|1113
*
9NLS|1|R3|G|1187
9NLS|1|R3|A|1188
9NLS|1|R3|U|1189
9NLS|1|R3|G|1190
9NLS|1|R3|A|1191
9NLS|1|R3|C|1192
9NLS|1|R3|G|1193
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain sb
- Small ribosomal subunit protein uS2
- Chain sc
- Small ribosomal subunit protein uS3
- Chain se
- Small ribosomal subunit protein uS5
- Chain sg
- 30S ribosomal protein S7
- Chain si
- Small ribosomal subunit protein uS9
- Chain sj
- 30S ribosomal protein S10
- Chain sn
- Small ribosomal subunit protein uS14
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