J3_9NO7_028

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

9NO7|1|a|A|975, 9NO7|1|a|G|976, 9NO7|1|a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9NO7_028 not in the Motif Atlas

Geometric match to J3_4LFB_004

Geometric discrepancy: 0.0556

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.2

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9NO7|1|a|U|955
9NO7|1|a|U|956
9NO7|1|a|U|957
9NO7|1|a|A|958
9NO7|1|a|A|959
9NO7|1|a|U|960
9NO7|1|a|U|961
9NO7|1|a|C|962
*
9NO7|1|a|G|973
9NO7|1|a|A|974
9NO7|1|a|A|975
9NO7|1|a|G|976
9NO7|1|a|A|977
9NO7|1|a|A|978
9NO7|1|a|C|979
9NO7|1|a|C|980
9NO7|1|a|U|981
9NO7|1|a|U|982
9NO7|1|a|A|983
9NO7|1|a|C|984
*
9NO7|1|a|G|1221
9NO7|1|a|G|1222
9NO7|1|a|C|1223
9NO7|1|a|G|1224
9NO7|1|a|A|1225

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain j

30S ribosomal protein S10

Chain m

30S ribosomal protein S13

Chain n

30S ribosomal protein S14 type Z

Chain s

30S ribosomal protein S19

Chain w

Peptide chain release factor 1