J3_9NPY_005
3D structure
- PDB id
- 9NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9NPY|1|i|U|1340
9NPY|1|i|C|1341
9NPY|1|i|U|1342
9NPY|1|i|U|1343
9NPY|1|i|A|1344
9NPY|1|i|G|1345
*
9NPY|1|i|C|1384
9NPY|1|i|G|1385
9NPY|1|i|A|1386
9NPY|1|i|G|1387
9NPY|1|i|A|1388
9NPY|1|i|C|1389
*
9NPY|1|i|G|1481
9NPY|1|i|C|1482
9NPY|1|i|A|1483
9NPY|1|i|A|1484
9NPY|1|i|U|1485
9NPY|1|i|A|1486
Current chains
- Chain i
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein uS3, RPS3
- Chain Q
- 40S ribosomal protein uS9, RPS16
- Chain R
- 40S ribosomal protein eS17, RPS17
- Chain U
- 40S ribosomal protein uS10, RPS20
- Chain d
- 40S ribosomal protein uS14, RPS29
Coloring options: