J3_9NPY_007
3D structure
- PDB id
- 9NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- (OMC)UGGC*GGACAAG*CCCGAGAUUG
- Length
- 22 nucleotides
- Bulged bases
- 9NPY|1|i|U|1477
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9NPY|1|i|OMC|1391
9NPY|1|i|U|1392
9NPY|1|i|G|1393
9NPY|1|i|G|1394
9NPY|1|i|C|1395
*
9NPY|1|i|G|1450
9NPY|1|i|G|1451
9NPY|1|i|A|1452
9NPY|1|i|C|1453
9NPY|1|i|A|1454
9NPY|1|i|A|1455
9NPY|1|i|G|1456
*
9NPY|1|i|C|1470
9NPY|1|i|C|1471
9NPY|1|i|C|1472
9NPY|1|i|G|1473
9NPY|1|i|A|1474
9NPY|1|i|G|1475
9NPY|1|i|A|1476
9NPY|1|i|U|1477
9NPY|1|i|U|1478
9NPY|1|i|G|1479
Current chains
- Chain i
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein uS3, RPS3
- Chain E
- 40S ribosomal protein uS7, RPS5
- Chain Q
- 40S ribosomal protein uS9, RPS16
- Chain R
- 40S ribosomal protein eS17, RPS17
- Chain U
- 40S ribosomal protein uS10, RPS20
- Chain c
- 40S ribosomal protein eS28, RPS28
- Chain d
- 40S ribosomal protein uS14, RPS29
- Chain g
- RACK1
Coloring options: