J3_9O2X_025

3D structure

PDB id

9O2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9O2X|1|a|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9O2X_025 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1867

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9O2X|1|a|C|1298
9O2X|1|a|G|1299
9O2X|1|a|G|1300
9O2X|1|a|A|1301
9O2X|1|a|A|1302
9O2X|1|a|G|1303
*
9O2X|1|a|C|1625
9O2X|1|a|A|1626
9O2X|1|a|G|1627
*
9O2X|1|a|C|1639
9O2X|1|a|A|1640
9O2X|1|a|A|1641
9O2X|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains