J3_9O3I_006

3D structure

PDB id

9O3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

9O3I|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9O3I_006 not in the Motif Atlas

Geometric match to J3_9DFE_006

Geometric discrepancy: 0.0575

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9O3I|1|1A|C|297
9O3I|1|1A|G|298
9O3I|1|1A|A|299
9O3I|1|1A|A|300
9O3I|1|1A|G|301
*
9O3I|1|1A|C|316
9O3I|1|1A|G|317
9O3I|1|1A|C|318
9O3I|1|1A|C|319
9O3I|1|1A|A|320
9O3I|1|1A|G|321
9O3I|1|1A|A|322
9O3I|1|1A|G|323
9O3I|1|1A|A|324
9O3I|1|1A|G|325
*
9O3I|1|1A|C|337
9O3I|1|1A|G|338
9O3I|1|1A|U|339
9O3I|1|1A|A|340
9O3I|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24