J3_9O3J_006

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

9O3J|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9O3J_006 not in the Motif Atlas

Geometric match to J3_9DFE_006

Geometric discrepancy: 0.0476

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9O3J|1|1A|C|297
9O3J|1|1A|G|298
9O3J|1|1A|A|299
9O3J|1|1A|A|300
9O3J|1|1A|G|301
*
9O3J|1|1A|C|316
9O3J|1|1A|G|317
9O3J|1|1A|C|318
9O3J|1|1A|C|319
9O3J|1|1A|A|320
9O3J|1|1A|G|321
9O3J|1|1A|A|322
9O3J|1|1A|G|323
9O3J|1|1A|A|324
9O3J|1|1A|G|325
*
9O3J|1|1A|C|337
9O3J|1|1A|G|338
9O3J|1|1A|U|339
9O3J|1|1A|A|340
9O3J|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24