J3_9O3J_011

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

9O3J|1|1A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9O3J_011 not in the Motif Atlas

Geometric match to J3_9DFE_011

Geometric discrepancy: 0.055

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9O3J|1|1A|C|1306
9O3J|1|1A|A|1307
9O3J|1|1A|A|1308
9O3J|1|1A|G|1309
*
9O3J|1|1A|C|1605
9O3J|1|1A|G|1606
9O3J|1|1A|C|1607
9O3J|1|1A|A|1608
9O3J|1|1A|A|1609
9O3J|1|1A|A|1610
9O3J|1|1A|C|1611
*
9O3J|1|1A|G|1620
9O3J|1|1A|U|1621
9O3J|1|1A|G|1622

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34