J3_9O3J_013

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9O3J_013 not in the Motif Atlas

Geometric match to J3_9DFE_013

Geometric discrepancy: 0.0564

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9O3J|1|1A|G|1424
9O3J|1|1A|G|1425
9O3J|1|1A|G|1426
9O3J|1|1A|A|1427
9O3J|1|1A|C|1428
9O3J|1|1A|G|1429
*
9O3J|1|1A|C|1564
9O3J|1|1A|C|1565
*
9O3J|1|1A|G|1568
9O3J|1|1A|A|1569
9O3J|1|1A|A|1570
9O3J|1|1A|A|1571
9O3J|1|1A|A|1572
9O3J|1|1A|G|1573
9O3J|1|1A|C|1574

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2