J3_9O3J_017

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

9O3J|1|1A|A|2518, 9O3J|1|1A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9O3J_017 not in the Motif Atlas

Geometric match to J3_9DFE_017

Geometric discrepancy: 0.0596

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9O3J|1|1A|C|2517
9O3J|1|1A|A|2518
9O3J|1|1A|U|2519
9O3J|1|1A|C|2520
*
9O3J|1|1A|G|2545
9O3J|1|1A|U|2546
9O3J|1|1A|U|2547
*
9O3J|1|1A|A|2561
9O3J|1|1A|U|2562
9O3J|1|1A|U|2563
9O3J|1|1A|A|2564
9O3J|1|1A|A|2565
9O3J|1|1A|A|2566
9O3J|1|1A|G|2567

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1O

50S ribosomal protein L14