J3_9O3J_062

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9O3J_062 not in the Motif Atlas

Geometric match to J3_4LFB_002

Geometric discrepancy: 0.1003

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

9O3J|1|2a|C|936
9O3J|1|2a|A|937
9O3J|1|2a|A|938
9O3J|1|2a|G|939
*
9O3J|1|2a|C|1344
9O3J|1|2a|U|1345
9O3J|1|2a|A|1346
9O3J|1|2a|G|1347
9O3J|1|2a|U|1348
9O3J|1|2a|A|1349
9O3J|1|2a|A|1350
*
9O3J|1|2a|U|1372
9O3J|1|2a|G|1373
9O3J|1|2a|A|1374
9O3J|1|2a|A|1375
9O3J|1|2a|U|1376
9O3J|1|2a|A|1377
9O3J|1|2a|C|1378
9O3J|1|2a|G|1379

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2y

Transfer RNA; tRNA