J3_9O3J_071

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

9O3J|1|2a|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9O3J_071 not in the Motif Atlas

Geometric match to J3_4LFB_018

Geometric discrepancy: 0.1425

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_40706.1

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9O3J|1|2a|C|1116
9O3J|1|2a|G|1117
9O3J|1|2a|C|1118
*
9O3J|1|2a|G|1155
9O3J|1|2a|G|1156
9O3J|1|2a|A|1157
9O3J|1|2a|C|1158
9O3J|1|2a|U|1159
9O3J|1|2a|G|1160
9O3J|1|2a|C|1161
*
9O3J|1|2a|G|1175
9O3J|1|2a|A|1176
9O3J|1|2a|G|1177
9O3J|1|2a|G|1178
9O3J|1|2a|A|1179
9O3J|1|2a|A|1180
9O3J|1|2a|G|1181
9O3J|1|2a|G|1182
9O3J|1|2a|A|1183
9O3J|1|2a|G|1184

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2i

30S ribosomal protein S9

Chain 2n

30S ribosomal protein S14 type Z