J3_9O3K_027

3D structure

PDB id

9O3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9O3K_027 not in the Motif Atlas

Geometric match to J3_4LFB_002

Geometric discrepancy: 0.0614

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

9O3K|1|1a|C|936
9O3K|1|1a|A|937
9O3K|1|1a|A|938
9O3K|1|1a|G|939
*
9O3K|1|1a|C|1344
9O3K|1|1a|U|1345
9O3K|1|1a|A|1346
9O3K|1|1a|G|1347
9O3K|1|1a|U|1348
9O3K|1|1a|A|1349
9O3K|1|1a|A|1350
*
9O3K|1|1a|U|1372
9O3K|1|1a|G|1373
9O3K|1|1a|A|1374
9O3K|1|1a|A|1375
9O3K|1|1a|U|1376
9O3K|1|1a|A|1377
9O3K|1|1a|C|1378
9O3K|1|1a|G|1379

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1g

30S ribosomal protein S7

Chain 1i

30S ribosomal protein S9

Chain 1y

Transfer RNA; tRNA