J3_9O3K_048

3D structure

PDB id

9O3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMAC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

9O3K|1|2A|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9O3K_048 not in the Motif Atlas

Geometric match to J3_9DFE_012

Geometric discrepancy: 0.0771

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

9O3K|1|2A|G|1344
9O3K|1|2A|C|1345
9O3K|1|2A|G|1346
9O3K|1|2A|G|1347
9O3K|1|2A|G|1348
9O3K|1|2A|A|1349
9O3K|1|2A|C|1350
*
9O3K|1|2A|G|1381
9O3K|1|2A|G|1382
9O3K|1|2A|C|1383
9O3K|1|2A|A|1384
9O3K|1|2A|G|1385
*
9O3K|1|2A|C|1402
9O3K|1|2A|C|1403

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23