J3_9O3L_040

3D structure

PDB id

9O3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolide erythromycin, mRNA, deacylated A-site tRNAphe, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAphe at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

9O3L|1|2A|C|34, 9O3L|1|2A|U|448, 9O3L|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9O3L_040 not in the Motif Atlas

Geometric match to J3_5J7L_067

Geometric discrepancy: 0.068

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

9O3L|1|2A|C|32
9O3L|1|2A|U|33
9O3L|1|2A|C|34
9O3L|1|2A|G|35
*
9O3L|1|2A|C|445
9O3L|1|2A|G|446
9O3L|1|2A|A|447
9O3L|1|2A|U|448
9O3L|1|2A|A|449
9O3L|1|2A|G|450
9O3L|1|2A|C|451
9O3L|1|2A|G|452
9O3L|1|2A|C|453
9O3L|1|2A|A|454
9O3L|1|2A|C|455
9O3L|1|2A|C|456
9O3L|1|2A|A|457
9O3L|1|2A|G|458
9O3L|1|2A|U|459
9O3L|1|2A|A|460
9O3L|1|2A|C|461
*
9O3L|1|2A|G|468
9O3L|1|2A|G|469
9O3L|1|2A|A|470
9O3L|1|2A|A|471
9O3L|1|2A|A|472
9O3L|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23