J3_9O3V_001

3D structure

PDB id

9O3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

9O3V|1|L5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3V|1|L5|C|112
9O3V|1|L5|A|113
9O3V|1|L5|G|114
9O3V|1|L5|C|115
9O3V|1|L5|G|116
*
9O3V|1|L5|C|155
9O3V|1|L5|G|156
9O3V|1|L5|U|157
9O3V|1|L5|A|158
9O3V|1|L5|C|159
9O3V|1|L5|G|160
*
9O3V|1|L5|C|275
9O3V|1|L5|C|276
9O3V|1|L5|G|277
9O3V|1|L5|G|278

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

Large ribosomal subunit protein eL8

Chain LL

Large ribosomal subunit protein eL13

Chain LN

Large ribosomal subunit protein eL15

Chain Lh

Large ribosomal subunit protein uL29

Chain Li

Large ribosomal subunit protein eL36