J3_9O3W_003
3D structure
- PDB id
- 9O3W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 9O3W|1|L5|U|354, 9O3W|1|L5|A|362, 9O3W|1|L8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9O3W|1|L5|C|351
9O3W|1|L5|G|352
9O3W|1|L5|A|353
9O3W|1|L5|U|354
9O3W|1|L5|A|355
9O3W|1|L5|G|356
9O3W|1|L5|U|357
9O3W|1|L5|C|358
9O3W|1|L5|A|359
9O3W|1|L5|A|360
9O3W|1|L5|C|361
9O3W|1|L5|A|362
9O3W|1|L5|A|363
9O3W|1|L5|G|364
9O3W|1|L5|U|365
9O3W|1|L5|A|366
9O3W|1|L5|C|367
*
9O3W|1|L5|G|374
9O3W|1|L5|G|375
9O3W|1|L5|A|376
9O3W|1|L5|A|377
9O3W|1|L5|A|378
9O3W|1|L5|G|379
*
9O3W|1|L8|C|21
9O3W|1|L8|U|22
9O3W|1|L8|C|23
9O3W|1|L8|G|24
Current chains
- Chain L5
- 28S rRNA
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LP
- Large ribosomal subunit protein uL22
- Chain LY
- Large ribosomal subunit protein uL24
- Chain Lj
- Large ribosomal subunit protein eL37
- Chain Ll
- Large ribosomal subunit protein eL39
- Chain NC
- Nascent chain
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