J3_9O3W_003

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CGAUAGUCAACAAGUAC*GGAAAG*CUCG

Length

27 nucleotides

Bulged bases

9O3W|1|L5|U|354, 9O3W|1|L5|A|362, 9O3W|1|L8|C|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9O3W_003 not in the Motif Atlas

Homologous match to J3_8GLP_024

Geometric discrepancy: 0.0214

The information below is about J3_8GLP_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.3

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

11

Unit IDs

9O3W|1|L5|C|351
9O3W|1|L5|G|352
9O3W|1|L5|A|353
9O3W|1|L5|U|354
9O3W|1|L5|A|355
9O3W|1|L5|G|356
9O3W|1|L5|U|357
9O3W|1|L5|C|358
9O3W|1|L5|A|359
9O3W|1|L5|A|360
9O3W|1|L5|C|361
9O3W|1|L5|A|362
9O3W|1|L5|A|363
9O3W|1|L5|G|364
9O3W|1|L5|U|365
9O3W|1|L5|A|366
9O3W|1|L5|C|367
*
9O3W|1|L5|G|374
9O3W|1|L5|G|375
9O3W|1|L5|A|376
9O3W|1|L5|A|377
9O3W|1|L5|A|378
9O3W|1|L5|G|379
*
9O3W|1|L8|C|21
9O3W|1|L8|U|22
9O3W|1|L8|C|23
9O3W|1|L8|G|24

Current chains

Chain L5

28S rRNA

Chain L8

5.8S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LP

Large ribosomal subunit protein uL22

Chain LY

Large ribosomal subunit protein uL24

Chain Lj

Large ribosomal subunit protein eL37

Chain Ll

Large ribosomal subunit protein eL39

Chain NC

Nascent chain