J3_9O3W_004

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

UUGAAAAG*CG*CA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|U|380
9O3W|1|L5|U|381
9O3W|1|L5|G|382
9O3W|1|L5|A|383
9O3W|1|L5|A|384
9O3W|1|L5|A|385
9O3W|1|L5|A|386
9O3W|1|L5|G|387
*
9O3W|1|L5|C|414
9O3W|1|L5|G|415
*
9O3W|1|L8|C|19
9O3W|1|L8|A|20

Current chains

Chain L5

28S rRNA

Chain L8

5.8S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LY

Large ribosomal subunit protein uL24

Chain Ll

Large ribosomal subunit protein eL39