J3_9O3W_011

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9O3W|1|L5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|C|2393
9O3W|1|L5|G|2394
9O3W|1|L5|A|2395
9O3W|1|L5|A|2396
9O3W|1|L5|G|2397
9O3W|1|L5|U|2398
9O3W|1|L5|G|2399
*
9O3W|1|L5|C|2805
9O3W|1|L5|A|2806
9O3W|1|L5|A|2807
*
9O3W|1|L5|U|2819
9O3W|1|L5|C|2820
9O3W|1|L5|U|2821
9O3W|1|L5|G|2822

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain Lg

Large ribosomal subunit protein eL34