J3_9O3W_012

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

9O3W|1|L5|U|2788, 9O3W|1|L5|A|2789, 9O3W|1|L5|U|2790

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|G|2402
9O3W|1|L5|A|2403
9O3W|1|L5|A|2404
9O3W|1|L5|G|2405
*
9O3W|1|L5|C|2785
9O3W|1|L5|C|2786
9O3W|1|L5|A2M|2787
9O3W|1|L5|U|2788
9O3W|1|L5|A|2789
9O3W|1|L5|U|2790
9O3W|1|L5|C|2791
*
9O3W|1|L5|G|2800
9O3W|1|L5|U|2801
9O3W|1|L5|C|2802

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lg

Large ribosomal subunit protein eL34

Chain Lj

Large ribosomal subunit protein eL37

Chain Ll

Large ribosomal subunit protein eL39