J3_9O3W_018

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

9O3W|1|L5|G|4076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9O3W_018 not in the Motif Atlas

Homologous match to J3_8GLP_007

Geometric discrepancy: 0.0221

The information below is about J3_8GLP_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9O3W|1|L5|C|3937
9O3W|1|L5|G|3938
9O3W|1|L5|G|3939
*
9O3W|1|L5|C|4074
9O3W|1|L5|U|4075
9O3W|1|L5|G|4076
9O3W|1|L5|A|4077
9O3W|1|L5|C|4078
*
9O3W|1|L5|G|4168
9O3W|1|L5|G|4169
9O3W|1|L5|A|4170
9O3W|1|L5|C|4171
9O3W|1|L5|A|4172
9O3W|1|L5|G|4173

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

Large ribosomal subunit protein eL8

Chain LN

Large ribosomal subunit protein eL15

Chain Li

Large ribosomal subunit protein eL36