J3_9O3W_023

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9O3W|1|L5|U|4882, 9O3W|1|L5|A|4938, 9O3W|1|L5|C|4940, 9O3W|1|L5|A|4943, 9O3W|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|G|4751
9O3W|1|L5|U|4752
9O3W|1|L5|U|4753
9O3W|1|L5|G|4754
*
9O3W|1|L5|C|4879
9O3W|1|L5|C|4880
9O3W|1|L5|U|4881
9O3W|1|L5|U|4882
9O3W|1|L5|C|4883
*
9O3W|1|L5|G|4936
9O3W|1|L5|C|4937
9O3W|1|L5|A|4938
9O3W|1|L5|C|4939
9O3W|1|L5|C|4940
9O3W|1|L5|G|4941
9O3W|1|L5|C|4942
9O3W|1|L5|A|4943
9O3W|1|L5|C|4944
9O3W|1|L5|G|4945
9O3W|1|L5|U|4946
9O3W|1|L5|U|4947
9O3W|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

Large ribosomal subunit protein eL14

Chain LO

Large ribosomal subunit protein uL13

Chain Lf

Large ribosomal subunit protein eL33