J3_9O3W_034

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|S2|C|1218
9O3W|1|S2|C|1219
9O3W|1|S2|A|1220
9O3W|1|S2|G|1221
*
9O3W|1|S2|C|1645
9O3W|1|S2|C|1646
9O3W|1|S2|A|1647
9O3W|1|S2|G|1648
9O3W|1|S2|U|1649
9O3W|1|S2|A|1650
9O3W|1|S2|A|1651
*
9O3W|1|S2|U|1673
9O3W|1|S2|G|1674
9O3W|1|S2|A|1675
9O3W|1|S2|U|1676
9O3W|1|S2|U|1677
9O3W|1|S2|A2M|1678
9O3W|1|S2|A|1679
9O3W|1|S2|G|1680

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

Small ribosomal subunit protein uS7

Chain SQ

Small ribosomal subunit protein uS9

Chain Sc

Small ribosomal subunit protein eS28