J3_9O3W_034
3D structure
- PDB id
- 9O3W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUU(A2M)AG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9O3W_034 not in the Motif Atlas
- Homologous match to J3_9H3G_035
- Geometric discrepancy: 0.0931
- The information below is about J3_9H3G_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.3
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
9O3W|1|S2|C|1218
9O3W|1|S2|C|1219
9O3W|1|S2|A|1220
9O3W|1|S2|G|1221
*
9O3W|1|S2|C|1645
9O3W|1|S2|C|1646
9O3W|1|S2|A|1647
9O3W|1|S2|G|1648
9O3W|1|S2|U|1649
9O3W|1|S2|A|1650
9O3W|1|S2|A|1651
*
9O3W|1|S2|U|1673
9O3W|1|S2|G|1674
9O3W|1|S2|A|1675
9O3W|1|S2|U|1676
9O3W|1|S2|U|1677
9O3W|1|S2|A2M|1678
9O3W|1|S2|A|1679
9O3W|1|S2|G|1680
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SF
- Small ribosomal subunit protein uS7
- Chain SQ
- Small ribosomal subunit protein uS9
- Chain Sc
- Small ribosomal subunit protein eS28
Coloring options: