J3_9O3W_041

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9O3W|1|S2|U|1535, 9O3W|1|S2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|S2|C|1532
9O3W|1|S2|A|1533
9O3W|1|S2|C|1534
9O3W|1|S2|U|1535
9O3W|1|S2|G|1536
*
9O3W|1|S2|C|1597
9O3W|1|S2|G|1598
9O3W|1|S2|U|1599
9O3W|1|S2|G|1600
9O3W|1|S2|A|1601
9O3W|1|S2|U|1602
9O3W|1|S2|G|1603
9O3W|1|S2|G|1604
*
9O3W|1|S2|C|1635
9O3W|1|S2|G|1636
9O3W|1|S2|A|1637
9O3W|1|S2|G|1638

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

Small ribosomal subunit protein uS7

Chain SS

Small ribosomal subunit protein uS13

Chain ST

Small ribosomal subunit protein eS19

Chain SZ

Small ribosomal subunit protein eS25