J3_9O3Y_023
3D structure
- PDB id
- 9O3Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUUG*CCUUC*GCACCGCACGUUC
- Length
- 22 nucleotides
- Bulged bases
- 9O3Y|1|L5|U|4882, 9O3Y|1|L5|A|4938, 9O3Y|1|L5|C|4940, 9O3Y|1|L5|A|4943, 9O3Y|1|L5|C|4944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9O3Y|1|L5|G|4751
9O3Y|1|L5|U|4752
9O3Y|1|L5|U|4753
9O3Y|1|L5|G|4754
*
9O3Y|1|L5|C|4879
9O3Y|1|L5|C|4880
9O3Y|1|L5|U|4881
9O3Y|1|L5|U|4882
9O3Y|1|L5|C|4883
*
9O3Y|1|L5|G|4936
9O3Y|1|L5|C|4937
9O3Y|1|L5|A|4938
9O3Y|1|L5|C|4939
9O3Y|1|L5|C|4940
9O3Y|1|L5|G|4941
9O3Y|1|L5|C|4942
9O3Y|1|L5|A|4943
9O3Y|1|L5|C|4944
9O3Y|1|L5|G|4945
9O3Y|1|L5|U|4946
9O3Y|1|L5|U|4947
9O3Y|1|L5|C|4948
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LE
- Large ribosomal subunit protein eL6
- Chain LM
- Large ribosomal subunit protein eL14
- Chain LO
- Large ribosomal subunit protein uL13
- Chain Lf
- Large ribosomal subunit protein eL33
Coloring options: