J3_9OFV_001
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 9OFV|1|f|U|117, 9OFV|1|f|G|120, 9OFV|1|f|A|121, 9OFV|1|f|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9OFV_001 not in the Motif Atlas
- Geometric match to J3_8CRE_001
- Geometric discrepancy: 0.0574
- The information below is about J3_8CRE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19664.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9OFV|1|f|C|113
9OFV|1|f|A|114
9OFV|1|f|A|115
9OFV|1|f|A|116
9OFV|1|f|U|117
9OFV|1|f|U|118
9OFV|1|f|U|119
9OFV|1|f|G|120
9OFV|1|f|A|121
9OFV|1|f|A|122
9OFV|1|f|A|123
*
9OFV|1|f|U|149
9OFV|1|f|A|150
9OFV|1|f|A|151
9OFV|1|f|U|152
9OFV|1|f|U|153
9OFV|1|f|U|154
9OFV|1|f|G|155
9OFV|1|f|G|156
9OFV|1|f|A|157
9OFV|1|f|G|158
*
9OFV|1|f|C|263
9OFV|1|f|G|264
9OFV|1|f|A|265
9OFV|1|f|A|266
9OFV|1|f|G|267
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain U
- 60S ribosomal protein L35-A
- Chain V
- 60S ribosomal protein L36-A
- Chain p
- 60S ribosomal protein L8-A
- Chain t
- 60S ribosomal protein L13-A
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