J3_9OFV_005
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9OFV_005 not in the Motif Atlas
- Geometric match to J3_8P9A_046
- Geometric discrepancy: 0.0512
- The information below is about J3_8P9A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9OFV|1|f|A|369
9OFV|1|f|U|370
9OFV|1|f|G|371
9OFV|1|f|A|372
9OFV|1|f|A|373
9OFV|1|f|A|374
9OFV|1|f|A|375
9OFV|1|f|G|376
*
9OFV|1|f|C|403
9OFV|1|f|G|404
*
9OFV|1|i|C|19
9OFV|1|i|U|20
Current chains
- Chain f
- 25S rRNA
- Chain i
- 5.8S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L26-A
- Chain Y
- 60S ribosomal protein L39
- Chain l
- Large ribosomal subunit protein uL4A
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