J3_9OFV_006
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 9OFV|1|f|A|398, 9OFV|1|f|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9OFV_006 not in the Motif Atlas
- Geometric match to J3_8CRE_006
- Geometric discrepancy: 0.0599
- The information below is about J3_8CRE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9OFV|1|f|A|369
9OFV|1|f|U|370
9OFV|1|f|G|371
9OFV|1|f|A|372
9OFV|1|f|A|373
9OFV|1|f|A|374
9OFV|1|f|A|375
9OFV|1|f|G|376
9OFV|1|f|A|377
9OFV|1|f|A|378
9OFV|1|f|C|379
*
9OFV|1|f|G|390
9OFV|1|f|A|391
9OFV|1|f|G|392
9OFV|1|f|U|393
9OFV|1|f|G|394
9OFV|1|f|A|395
9OFV|1|f|A|396
9OFV|1|f|A|397
9OFV|1|f|A|398
9OFV|1|f|A|399
9OFV|1|f|G|400
9OFV|1|f|U|401
9OFV|1|f|A|402
9OFV|1|f|C|403
9OFV|1|f|G|404
*
9OFV|1|i|C|19
9OFV|1|i|U|20
Current chains
- Chain f
- 25S rRNA
- Chain i
- 5.8S rRNA
Nearby chains
- Chain 3
- 60S ribosomal protein L17-A
- Chain L
- 60S ribosomal protein L26-A
- Chain Y
- 60S ribosomal protein L39
- Chain l
- Large ribosomal subunit protein uL4A
Coloring options: