J3_9OFV_020
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 9OFV|1|f|C|2760, 9OFV|1|f|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9OFV_020 not in the Motif Atlas
- Geometric match to J3_8CRE_021
- Geometric discrepancy: 0.0586
- The information below is about J3_8CRE_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9OFV|1|f|G|2651
9OFV|1|f|U|2652
9OFV|1|f|C|2653
*
9OFV|1|f|G|2754
9OFV|1|f|C|2755
9OFV|1|f|C|2756
9OFV|1|f|U|2757
9OFV|1|f|A|2758
9OFV|1|f|U|2759
9OFV|1|f|C|2760
9OFV|1|f|G|2761
9OFV|1|f|A|2762
9OFV|1|f|U|2763
9OFV|1|f|C|2764
9OFV|1|f|C|2765
*
9OFV|1|f|G|2793
9OFV|1|f|G|2794
9OFV|1|f|U|2795
9OFV|1|f|G|2796
9OFV|1|f|C|2797
9OFV|1|f|C|2798
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain 4
- 60S ribosomal protein L18-A
- Chain 7
- 60S ribosomal protein L21-A
- Chain N
- 60S ribosomal protein L28
- Chain b
- 60S ribosomal protein L42-A
Coloring options: