J3_9OGY_001

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAAAG*CGCAAAU*AGUGACG

Length

19 nucleotides

Bulged bases

9OGY|1|2|A|516

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|C|37
9OGY|1|2|A|38
9OGY|1|2|A|39
9OGY|1|2|A|40
9OGY|1|2|G|41
*
9OGY|1|2|C|481
9OGY|1|2|G|482
9OGY|1|2|C|483
9OGY|1|2|A|484
9OGY|1|2|A|485
9OGY|1|2|A|486
9OGY|1|2|U|487
*
9OGY|1|2|A|512
9OGY|1|2|G|513
9OGY|1|2|U|514
9OGY|1|2|G|515
9OGY|1|2|A|516
9OGY|1|2|C|517
9OGY|1|2|G|518

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain K

Ribosomal protein S9 (Predicted)

Chain Y

uS12