J3_9OGY_002

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|A|816
9OGY|1|2|G|817
9OGY|1|2|A|818
9OGY|1|2|G|819
*
9OGY|1|2|C|829
9OGY|1|2|A|830
9OGY|1|2|G|831
*
9OGY|1|2|C|843
9OGY|1|2|U|844
9OGY|1|2|G|845
9OGY|1|2|G|846
9OGY|1|2|A|847
9OGY|1|2|U|848

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain K

Ribosomal protein S9 (Predicted)

Chain Z

eS24