J3_9OGY_002
3D structure
- PDB id
- 9OGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9OGY_002 not in the Motif Atlas
- Homologous match to J3_9H3G_032
- Geometric discrepancy: 0.3019
- The information below is about J3_9H3G_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97642.4
- Basepair signature
- cWW-tSH-F-F-cWW-F-tWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9OGY|1|2|A|816
9OGY|1|2|G|817
9OGY|1|2|A|818
9OGY|1|2|G|819
*
9OGY|1|2|C|829
9OGY|1|2|A|830
9OGY|1|2|G|831
*
9OGY|1|2|C|843
9OGY|1|2|U|844
9OGY|1|2|G|845
9OGY|1|2|G|846
9OGY|1|2|A|847
9OGY|1|2|U|848
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S4
- Chain K
- Ribosomal protein S9 (Predicted)
- Chain Z
- eS24
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