J3_9OGY_007

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUUAAUUU*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

9OGY|1|2|A|1240, 9OGY|1|2|G|1256, 9OGY|1|2|A|1258, 9OGY|1|2|A|1259, 9OGY|1|2|C|1518, 9OGY|1|2|U|1519

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|C|1237
9OGY|1|2|U|1238
9OGY|1|2|U|1239
9OGY|1|2|A|1240
9OGY|1|2|A|1241
9OGY|1|2|U|1242
9OGY|1|2|U|1243
9OGY|1|2|U|1244
*
9OGY|1|2|G|1255
9OGY|1|2|G|1256
9OGY|1|2|G|1257
9OGY|1|2|A|1258
9OGY|1|2|A|1259
9OGY|1|2|A|1260
9OGY|1|2|C|1261
9OGY|1|2|C|1262
9OGY|1|2|U|1263
9OGY|1|2|C|1264
9OGY|1|2|A|1265
9OGY|1|2|C|1266
*
9OGY|1|2|G|1516
9OGY|1|2|G|1517
9OGY|1|2|C|1518
9OGY|1|2|U|1519
9OGY|1|2|G|1520

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

uS19

Chain T

uS13

Chain V

uS10

Chain e

eS29