J3_9OGY_008

3D structure

PDB id

9OGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGGAC*GGGUG*UUAGAUG

Length

17 nucleotides

Bulged bases

9OGY|1|2|G|1274, 9OGY|1|2|G|1507, 9OGY|1|2|U|1509

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9OGY|1|2|C|1273
9OGY|1|2|G|1274
9OGY|1|2|G|1275
9OGY|1|2|A|1276
9OGY|1|2|C|1277
*
9OGY|1|2|G|1320
9OGY|1|2|G|1321
9OGY|1|2|G|1322
9OGY|1|2|U|1323
9OGY|1|2|G|1324
*
9OGY|1|2|U|1504
9OGY|1|2|U|1505
9OGY|1|2|A|1506
9OGY|1|2|G|1507
9OGY|1|2|A|1508
9OGY|1|2|U|1509
9OGY|1|2|G|1510

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

S10_plectin domain-containing protein

Chain e

eS29

Chain g

eS31