J3_9P79_007

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGA(A2M)C(PSU)A*UAG*CGAA

Length

14 nucleotides

Bulged bases

9P79|1|L5|A2M|1534, 9P79|1|L5|G|1641, 9P79|1|L5|A|1642

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P79|1|L5|U|1531
9P79|1|L5|G|1532
9P79|1|L5|A|1533
9P79|1|L5|A2M|1534
9P79|1|L5|C|1535
9P79|1|L5|PSU|1536
9P79|1|L5|A|1537
*
9P79|1|L5|U|1622
9P79|1|L5|A|1623
9P79|1|L5|G|1624
*
9P79|1|L5|C|1640
9P79|1|L5|G|1641
9P79|1|L5|A|1642
9P79|1|L5|A|1643

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39