J3_9P7D_017

3D structure

PDB id

9P7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class4 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

9P7D|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7D|1|L5|A|2551
9P7D|1|L5|G|2552
9P7D|1|L5|A|2553
9P7D|1|L5|U|2554
9P7D|1|L5|G|2555
*
9P7D|1|L5|C|2572
9P7D|1|L5|A|2573
9P7D|1|L5|G|2574
9P7D|1|L5|U|2575
*
9P7D|1|L5|A|2757
9P7D|1|L5|G|2758
9P7D|1|L5|G|2759
9P7D|1|L5|G|2760
9P7D|1|L5|U|2761
9P7D|1|L5|G|2762
9P7D|1|L5|U|2763
9P7D|1|L5|A|2764
9P7D|1|L5|A|2765
9P7D|1|L5|A|2766
9P7D|1|L5|U|2767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27