J3_9P7E_025

3D structure

PDB id

9P7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class5 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9P7E|1|L5|U|4882, 9P7E|1|L5|A|4938, 9P7E|1|L5|C|4940, 9P7E|1|L5|A|4943, 9P7E|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7E|1|L5|G|4751
9P7E|1|L5|U|4752
9P7E|1|L5|U|4753
9P7E|1|L5|G|4754
*
9P7E|1|L5|C|4879
9P7E|1|L5|C|4880
9P7E|1|L5|U|4881
9P7E|1|L5|U|4882
9P7E|1|L5|C|4883
*
9P7E|1|L5|G|4936
9P7E|1|L5|C|4937
9P7E|1|L5|A|4938
9P7E|1|L5|C|4939
9P7E|1|L5|C|4940
9P7E|1|L5|G|4941
9P7E|1|L5|C|4942
9P7E|1|L5|A|4943
9P7E|1|L5|C|4944
9P7E|1|L5|G|4945
9P7E|1|L5|U|4946
9P7E|1|L5|U|4947
9P7E|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a