J3_9P8I_021

3D structure

PDB id

9P8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.89 Å

Loop

Sequence

(OMG)UC*GCCUCACGAUCC*(OMG)GUGUC

Length

21 nucleotides

Bulged bases

9P8I|1|L5|C|4337, 9P8I|1|L5|U|4374

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P8I|1|L5|OMG|4228
9P8I|1|L5|U|4229
9P8I|1|L5|C|4230
*
9P8I|1|L5|G|4331
9P8I|1|L5|C|4332
9P8I|1|L5|C|4333
9P8I|1|L5|U|4334
9P8I|1|L5|C|4335
9P8I|1|L5|A|4336
9P8I|1|L5|C|4337
9P8I|1|L5|G|4338
9P8I|1|L5|A|4339
9P8I|1|L5|U|4340
9P8I|1|L5|C|4341
9P8I|1|L5|C|4342
*
9P8I|1|L5|OMG|4370
9P8I|1|L5|G|4371
9P8I|1|L5|U|4372
9P8I|1|L5|G|4373
9P8I|1|L5|U|4374
9P8I|1|L5|C|4375

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain La

60S ribosomal protein L27a

Chain Lo

60S ribosomal protein L36a

Chain Zt

Transfer RNA; tRNA