J3_9P9I_013

3D structure

PDB id

9P9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9P9I|1|L5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P9I|1|L5|C|2393
9P9I|1|L5|G|2394
9P9I|1|L5|A|2395
9P9I|1|L5|A|2396
9P9I|1|L5|G|2397
9P9I|1|L5|U|2398
9P9I|1|L5|G|2399
*
9P9I|1|L5|C|2805
9P9I|1|L5|A|2806
9P9I|1|L5|A|2807
*
9P9I|1|L5|U|2819
9P9I|1|L5|C|2820
9P9I|1|L5|U|2821
9P9I|1|L5|G|2822

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34