J3_9P9K_025

3D structure

PDB id

9P9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with EIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9P9K|1|L5|U|4882, 9P9K|1|L5|A|4938, 9P9K|1|L5|C|4940, 9P9K|1|L5|A|4943, 9P9K|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P9K|1|L5|G|4751
9P9K|1|L5|U|4752
9P9K|1|L5|U|4753
9P9K|1|L5|G|4754
*
9P9K|1|L5|C|4879
9P9K|1|L5|C|4880
9P9K|1|L5|U|4881
9P9K|1|L5|U|4882
9P9K|1|L5|C|4883
*
9P9K|1|L5|G|4936
9P9K|1|L5|C|4937
9P9K|1|L5|A|4938
9P9K|1|L5|C|4939
9P9K|1|L5|C|4940
9P9K|1|L5|G|4941
9P9K|1|L5|C|4942
9P9K|1|L5|A|4943
9P9K|1|L5|C|4944
9P9K|1|L5|G|4945
9P9K|1|L5|U|4946
9P9K|1|L5|U|4947
9P9K|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a