J3_9PA7_001

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

9PA7|1|L5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|C|112
9PA7|1|L5|A|113
9PA7|1|L5|G|114
9PA7|1|L5|C|115
9PA7|1|L5|G|116
*
9PA7|1|L5|C|155
9PA7|1|L5|G|156
9PA7|1|L5|U|157
9PA7|1|L5|A|158
9PA7|1|L5|C|159
9PA7|1|L5|G|160
*
9PA7|1|L5|C|275
9PA7|1|L5|C|276
9PA7|1|L5|G|277
9PA7|1|L5|G|278

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain LL

Large ribosomal subunit protein eL13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36