J3_9PA7_017

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

9PA7|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|A|2551
9PA7|1|L5|G|2552
9PA7|1|L5|A|2553
9PA7|1|L5|U|2554
9PA7|1|L5|G|2555
*
9PA7|1|L5|C|2572
9PA7|1|L5|A|2573
9PA7|1|L5|G|2574
9PA7|1|L5|U|2575
*
9PA7|1|L5|A|2757
9PA7|1|L5|G|2758
9PA7|1|L5|G|2759
9PA7|1|L5|G|2760
9PA7|1|L5|U|2761
9PA7|1|L5|G|2762
9PA7|1|L5|U|2763
9PA7|1|L5|A|2764
9PA7|1|L5|A|2765
9PA7|1|L5|A|2766
9PA7|1|L5|U|2767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27