J3_9PBE_004

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UUGAAAAG*CG*CA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|L5|U|380
9PBE|1|L5|U|381
9PBE|1|L5|G|382
9PBE|1|L5|A|383
9PBE|1|L5|A|384
9PBE|1|L5|A|385
9PBE|1|L5|A|386
9PBE|1|L5|G|387
*
9PBE|1|L5|C|414
9PBE|1|L5|G|415
*
9PBE|1|L8|C|19
9PBE|1|L8|A|20

Current chains

Chain L5

28S rRNA

Chain L8

5.8S rRNA [Homo sapiens]

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26

Chain Ll

60S ribosomal protein L39